Benchmarks for a snakemake pipeline

See the graph below for run metrics. You can pan and zoom on the graph to make busy areas more readable.

Median values for each rule

See stackoverflow for the meaning of each column
rule s max_rss max_vms max_uss max_pss io_in io_out mean_load cpu_time
vcf_filter 0.95340 3.350 9.420 0.360 0.440 0.000 0.000 0.000 0.000
filtering 0.59300 71.030 134.585 48.070 56.990 0.000 0.035 0.000 0.330
annotate 5.19950 128.225 156.720 117.180 118.135 0.000 1.285 80.625 4.860
calling 9026.18830 471.740 503.490 452.485 454.040 2.485 0.390 105.675 9536.035
umi_to_rx 197.75075 557.585 34719.390 518.325 530.615 0.000 680.990 111.535 225.970
qc_report 12.51550 640.670 859.340 633.710 633.970 33.210 3.870 72.460 7.310
fastp 163.63560 765.355 1210.845 761.060 761.645 0.000 1039.500 299.180 466.860
fasta_to_elfasta 8.40250 5603.570 6316.890 5601.030 5601.160 0.000 0.000 98.480 0.000
align 848.92580 8996.895 9956.030 8985.830 8986.680 0.000 1070.930 368.100 143.285
sam_stats 158.07610 21318.725 21709.845 21293.535 21296.565 0.580 0.000 258.765 30.380
elprep 324.32975 22395.980 23403.485 21008.020 21448.250 1.375 680.335 356.625 1113.590